The Main Window Profiles Panel

Profiles Panel

    The panel shows the profiles as lines with vertical positions dependent on the level of expression. It also identifies the axes used in the 2D and 3D views (the X,Y,Z boxes).

    Clicking on the profile of a gene selects that gene. The ORF identifier of the selected gene is shown in red in the Profile Panel, the selected gene is shown by a thick green line in this panel, it is highlighted in the List Panel, and the gene is also marked in the 2D and 3D views. Clicking on the background of the panel (i.e. on no profile) allows you to deselect a previously selected gene.


    Clicking on a vertical axis shows the name of the corresponding data attribute.

    You can customize the view preferences with the Button Panel.

    A right-click on the heat map of a cluster allows you to select the clicked gene, it is then marked in the heat map as well as in the 2D or 3D views. You can also show that cluster in the Closest Clusters window, where it can be then compared to the other clusters. Finally, you can put the list of the genes in the clicked cluster into the clipboard, allowing you to paste the data into another application, such as Microsoft Excel.