| The Control Panel features buttons used to
import data to and export data from the Classification Compare window:
- The "Add Current" button imports into the window
the classification currently being shown in ArrayMiner's main
graphic window
- The "Update current" button replaces a selected
classification by the one currently being shown in ArrayMiner's main
graphic window. This is useful for monitoring the changes in the classification
during ArrayMiner's optimization process
- The "Open Scheme" button allows you to open a previously
saved classification (amc
extension). This is extremely useful for comparing classifications performed
with different parameters, in particular different numbers of clusters.
Several classifications can be open simultaneously. If you are running
under GeneSpring, you can directly open a GeneSpring classification
(xml extension) by browsing the directory of GeneSpring
corresponding to your organism, opening its classification folder, and
choosing the appropriate classification.
- The "Paste" button generates a classification
from clipboard (See How do I
create a classification from clipboard page)
- The "Save Scheme" button allows you to save a classification
selected in the Display Panel, so that you can subsequently compare
it to other classifications of the same data.
- The "Copy" button copies the classification
into the clipboard.
- The "Remove All" button deletes all classifications
- The "Remove Selected" button deletes a selected classification
from the window
- The "Spread All Vert." button readjusts
the vertical spacing in all classifications (learn more on cluster adjustments
here)
- The "Spread Vertically" button readjusts
the vertical spacing in the selected classification
- The "Match Colors" button attempts to match as well
as possible the comparator's graph colors with the current solution
cluster colors
- The "Show Outliers" checkbox allows you to show or
hide connections to and from unassigned (outlier gaussian
model only) items.
- The "Spreadsheet" button switches to the table mode
of the classification compare window
- The "Graphics" button switches to the graphical mode
of the classification compare window
- The "Low-fit item filter" lets you choose the minimal
fit of a gene to display a link. This quality measure is calculated
with the current clustering criterion on the left side of the link.
If there are no genes with high enough quality, the link disappears.
You can also click on the percent box to choose this value more precisely.
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