Gene List To Clipboard Preferences

Gene list to clipboard preferences


    This dialog selects the data that will be written to the system clipboard upon selecting the List To Clipboard option for a cluster. The following check-boxes are available:

  • Use header row prepends a header row to the table
  • Cluster ID adds a column with the cluster ID or the cluster name when defined (more here)
  • Gene Name adds a column containing the gene names
  • Description adds a column containing the gene descriptions
  • Closest cluster adds a column with the ID or the name of the closest cluster to this gene (without considering the gene's own cluster - see also the Closest Clusters window)
  • In value adds a column with the fit of the gene within its cluster
  • Out value adds a column with the fit of the gene within its closest cluster
  • Fit value adds a column containing the following formula : (In - Out)/(In + Out), in percents
  • Coloring Scheme adds a column with the name of the coloring scheme cluster assigned to this gene.(This option will be disabled if no coloring scheme is selected)
  • Gene used data adds experiment data columns as used by the algorithm (after all preprocessing - see also here)
  • Gene raw data adds experiment data columns as they were read from the input file

NOTE

    You can use this dialog to run ArrayMiner with only the genes in the selected cluster. To do so, uncheck all checkboxes except

- Use header Row
- Gene Name
- Description
- Gene Raw Data

    and click Copy. Then select the load data from clipboard option of ArrayMiner.