The Main Window 2D mode


2D Objects

   The figure on the left shows a typical representation in ArrayMiner. Each 2D point is a gene. There are four clusters (displayed in the hulls) and a number of unassigned points (displayed with red crosses. Note that only the gaussian model allows unassigned points).

 

 
Selected Gene in the 2D View
   The selected gene is drawn in a target. To select one gene simply right click on it. You can also use the "Find window" to select it.
 


Objects in the 2D View

 

Contextual Menus

  • Background contextual menu :
    • The "Show all" option turn all the clusters to the visible state.(You can also use the "A" shortcut)
    • The "Invert selection" option invert the visible state of all clusters
  • Gene contextual menu :
    • The "Select item" option will select the gene
    • The "Hide group" option will hide the gene's cluster
    • The "Best point of view from this cluster" option shows the selected cluster in the most significant axes
    • The "Show cluster in closest clusters" option opens the closest cluster window with the currently selected cluster
    • The "Show all" option turn all the clusters to the visible state.(You can also use the "A" shortcut)
    • The "Invert selection" option invert the visible state of all clusters